Publications

  • Anna Ritz, Gregory Shakhnarovich, Arthur R. Salomon, Benjamin J. Raphael, Discovery of Motif Mixtures in Phosphoproteomics Data, in submission.
  • Deborah S Gross, Robert Atlas, Jeffrey Rzeszotarski, Emma Turetsky, Janara Christensen, Sami Benzaid, Jamie Olson, Thomas Smith, Leah Steinberg, Jon Sulman, Anna Ritz, Benjamin Anderson, Catherine Nelson, David R Musicant, Lei Chen, David C Snyder, James J Schauer, ENCHILADA: Environmental Chemistry through Intelligent Atmospheric Data Analysis, in submission.
  • Vinh Nguyen, Lulu Cao, Jonathan T. Lin, Anna Ritz, Norris Hung, Radu Jianu, Benjamin J. Raphael, David H. Laidlaw, Laurent Brossay, Arthur R. Salomon, A New Approach for Quantitative Phosphoproteomic Dissection of Signaling Pathways Applied to T Cell Receptor Activation, in submission.
  • Lulu Cao, Kebing Yu, Cindy Banh, Vinh Nguyen, Anna Ritz, Benjamin J. Raphael, Yuko Kawakami, Toshiaki Kawakami, and Arthur R. Salomon, Quantitative Time-Resolved Phosphoproteomic Analysis of Mast Cell Signaling, Journal of Immunology, 179: 5864-5876 [pdf]
  • Benjamin J. Anderson, Deborah S. Gross, David R. Musicant, Anna M. Ritz, Thomas G. Smith, Leah E. Steinberg, Adapting K-Medians to Generate Normalized Cluster Centers, Proceedings of the Sixth SIAM International Conference on Data Mining, Joydeep Ghosh, Diane Lambert, David Skillcorn, Jaideep Srivastava, editors, Society for Industrial and Applied Mathematics, Bethesda, MD, 2006, pages 165-175 [pdf]
  • Benjamin J. Anderson, David R. Musicant, Anna M. Ritz, Andrew Ault, Deborah S. Gross, Melanie Yuen, Markus Gaelli, User-Friendly Clustering for Atmospheric Data Analysis, Carleton College Computer Science Technical Report 2005a [pdf]

    • Posters

    • A Minimum Description Length Approach to Multiple Motif Finding, Poster Presentation, Workshop for Women in Machine Learning (WiML): October 2007 [pdf]
    • Temporal Clustering of Protein Phosphorylation Networks, Poster Presentation, Center for Computational Molecular Biology (CCMB), Brown University, May 2007 [pdf]
    • Broadening Enchilada: Generalizing the Particle Abstractions and Importation Devices Poster Presentation, Carleton College: August 2006 [pdf]
    • Generating Normalized Cluster Centers with KMedians Paper presentation, SIAM Data Mining Conference (SDM): April 2006 [pdf]
    • The Manhattan Normalization Algorithm Poster Presentation, ACM Special Interest Group on Computer Science Education (SIGCSE): March 2006 [pdf]
    • A Platform for Mining ATOFMS and Other Atmospheric Data Presentation to TSI Inc, manufacturer of Aerosol Time-Of-Flight Mass Spectrometers (ATOFMS), August 2005 [pdf]
    • Clustering Algorithms: A New Look at Mass Spectra Poster Presentation, Carleton College: August 2004 [pdf]